STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_1660yacP-like uncharacterized protein; Predicted RNA-binding protein containing a PIN domain. (456 aa)    
Predicted Functional Partners:
mshC
cysteinyl-tRNA synthetase; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily.
  
  
 0.789
cysS
Cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.789
ssgB
Sporulation and cell division protein SsgA.
  
     0.719
ACPL_6383
Hypothetical protein.
  
     0.710
ACPL_1659
DNA polymerase III subunit epsilon; Nuclease subunit of the excinuclease complex.
       0.707
ACPL_6384
Helix-turn-helix domain-containing protein.
  
     0.696
ACPL_8168
Hypothetical protein.
  
     0.692
ACPL_2406
Hypothetical protein.
  
     0.689
ACPL_1221
Putative DNA-binding protein.
  
     0.688
ACPL_3887
Helix-turn-helix domain-containing protein.
  
     0.688
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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