degU protein (Actinoplanes sp. SE50110) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

degU

Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (222 aa)

Predicted Functional Partners:

ACPL_1671

0.964

ACPL_6884

0.699

ACPL_3850

0.697

ACPL_6206

0.679

ACPL_4240

0.675

ACPL_4563

0.662

ACPL_6869

0.660

ACPL_2515

0.657

ACPL_6579

0.656

barA

0.626

Your Current Organism:

Actinoplanes sp. SE50110

NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACPL_1671	degU	ACPL_1671	ACPL_1670	ATPase domain-containing protein; Signal transduction histidine kinase.	Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	0.964
ACPL_2515	degU	ACPL_2515	ACPL_1670	Two-component system sensor kinase; Signal transduction histidine kinase.	Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	0.657
ACPL_3850	degU	ACPL_3850	ACPL_1670	Nitrate/nitrite sensor protein narQ; Signal transduction histidine kinase.	Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	0.697
ACPL_4240	degU	ACPL_4240	ACPL_1670	Signal transduction histidine kinase.	Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	0.675
ACPL_4563	degU	ACPL_4563	ACPL_1670	Signal transduction histidine kinase.	Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	0.662
ACPL_6206	degU	ACPL_6206	ACPL_1670	Signal transduction histidine kinase.	Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	0.679
ACPL_6579	degU	ACPL_6579	ACPL_1670	Signal transduction histidine kinase.	Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	0.656
ACPL_6869	degU	ACPL_6869	ACPL_1670	Signal transduction histidine kinase.	Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	0.660
ACPL_6884	degU	ACPL_6884	ACPL_1670	Signal transduction histidine kinase.	Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	0.699
barA	degU	ACPL_3376	ACPL_1670	Sensory box histidine kinase/response regulator; Signal transduction histidine kinase.	Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	0.626
degU	ACPL_1671	ACPL_1670	ACPL_1671	Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	ATPase domain-containing protein; Signal transduction histidine kinase.	0.964
degU	ACPL_2515	ACPL_1670	ACPL_2515	Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	Two-component system sensor kinase; Signal transduction histidine kinase.	0.657
degU	ACPL_3850	ACPL_1670	ACPL_3850	Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	Nitrate/nitrite sensor protein narQ; Signal transduction histidine kinase.	0.697
degU	ACPL_4240	ACPL_1670	ACPL_4240	Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	Signal transduction histidine kinase.	0.675
degU	ACPL_4563	ACPL_1670	ACPL_4563	Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	Signal transduction histidine kinase.	0.662
degU	ACPL_6206	ACPL_1670	ACPL_6206	Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	Signal transduction histidine kinase.	0.679
degU	ACPL_6579	ACPL_1670	ACPL_6579	Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	Signal transduction histidine kinase.	0.656
degU	ACPL_6869	ACPL_1670	ACPL_6869	Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	Signal transduction histidine kinase.	0.660
degU	ACPL_6884	ACPL_1670	ACPL_6884	Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	Signal transduction histidine kinase.	0.699
degU	barA	ACPL_1670	ACPL_3376	Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	Sensory box histidine kinase/response regulator; Signal transduction histidine kinase.	0.626

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2026

Credits

Access

Info

About