Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
metHepatocyte growth factor receptor; FOG: Ankyrin repeat. (500 aa)    
Predicted Functional Partners:
qcrC
Cytochrome c, mono- and diheme variants.
   
 0.629
aroG
3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; Belongs to the class-II DAHP synthase family.
       0.628
ACPL_1699
Threonine aldolase.
       0.628
ACPL_1701
Fibrocystin-L; FOG: Ankyrin repeat.
 
    
0.609
ctaE
Heme/copper-type cytochrome/quinol oxidase, subunit 3.
  
 
 0.606
qcrB
Cytochrome b subunit of the bc complex.
    
 0.582
cydA
Cytochrome bd-type quinol oxidase, subunit 1.
    
 0.570
g7c
Protein G7c.
  
     0.569
efeU
Ferrous iron permease efeU; High-affinity Fe2+/Pb2+ permease.
     
 0.559
cydB
Cytochrome bd-type quinol oxidase, subunit 2.
     
  0.535
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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