pac protein (Actinoplanes sp. SE50110) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

pac

Major cell-surface adhesin PAc; Myosin heavy chain. (215 aa)

Predicted Functional Partners:

ACPL_1705

0.578

ACPL_1706

0.541

ACPL_1703

0.535

ACPL_1707

0.533

nfo

0.508

ACPL_8226

0.406

Your Current Organism:

Actinoplanes sp. SE50110

NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACPL_1703	ACPL_1705	ACPL_1703	ACPL_1705	Serine/threonine protein kinase.	Hypothetical protein.	0.521
ACPL_1703	nfo	ACPL_1703	ACPL_1702	Serine/threonine protein kinase.	Deoxyribonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.	0.865
ACPL_1703	pac	ACPL_1703	ACPL_1704	Serine/threonine protein kinase.	Major cell-surface adhesin PAc; Myosin heavy chain.	0.535
ACPL_1705	ACPL_1703	ACPL_1705	ACPL_1703	Hypothetical protein.	Serine/threonine protein kinase.	0.521
ACPL_1705	ACPL_1706	ACPL_1705	ACPL_1706	Hypothetical protein.	Hypothetical protein.	0.815
ACPL_1705	ACPL_1707	ACPL_1705	ACPL_1707	Hypothetical protein.	Hypothetical protein.	0.790
ACPL_1705	nfo	ACPL_1705	ACPL_1702	Hypothetical protein.	Deoxyribonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.	0.452
ACPL_1705	pac	ACPL_1705	ACPL_1704	Hypothetical protein.	Major cell-surface adhesin PAc; Myosin heavy chain.	0.578
ACPL_1706	ACPL_1705	ACPL_1706	ACPL_1705	Hypothetical protein.	Hypothetical protein.	0.815
ACPL_1706	ACPL_1707	ACPL_1706	ACPL_1707	Hypothetical protein.	Hypothetical protein.	0.967
ACPL_1706	pac	ACPL_1706	ACPL_1704	Hypothetical protein.	Major cell-surface adhesin PAc; Myosin heavy chain.	0.541
ACPL_1707	ACPL_1705	ACPL_1707	ACPL_1705	Hypothetical protein.	Hypothetical protein.	0.790
ACPL_1707	ACPL_1706	ACPL_1707	ACPL_1706	Hypothetical protein.	Hypothetical protein.	0.967
ACPL_1707	pac	ACPL_1707	ACPL_1704	Hypothetical protein.	Major cell-surface adhesin PAc; Myosin heavy chain.	0.533
ACPL_8226	pac	ACPL_8226	ACPL_1704	Cell surface glycoprotein 1; Outer membrane protein/protective antigen OMA87.	Major cell-surface adhesin PAc; Myosin heavy chain.	0.406
nfo	ACPL_1703	ACPL_1702	ACPL_1703	Deoxyribonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.	Serine/threonine protein kinase.	0.865
nfo	ACPL_1705	ACPL_1702	ACPL_1705	Deoxyribonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.	Hypothetical protein.	0.452
nfo	pac	ACPL_1702	ACPL_1704	Deoxyribonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.	Major cell-surface adhesin PAc; Myosin heavy chain.	0.508
pac	ACPL_1703	ACPL_1704	ACPL_1703	Major cell-surface adhesin PAc; Myosin heavy chain.	Serine/threonine protein kinase.	0.535
pac	ACPL_1705	ACPL_1704	ACPL_1705	Major cell-surface adhesin PAc; Myosin heavy chain.	Hypothetical protein.	0.578