ACPL_172 protein (Actinoplanes sp. SE50110) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ACPL_172

fadF-like uncharacterized protein; Fe-S oxidoreductase. (715 aa)

Predicted Functional Partners:

ACPL_2316

0.611

ACPL_4163

0.611

glpD

0.565

glpD-2

0.565

glpD-3

0.565

gpd2

0.565

ACPL_2317

0.525

ACPL_4162

0.525

ACPL_173

0.521

ACPL_174

0.521

Your Current Organism:

Actinoplanes sp. SE50110

NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACPL_172	ACPL_173	ACPL_172	ACPL_173	fadF-like uncharacterized protein; Fe-S oxidoreductase.	yugS-like uncharacterized protein; Hemolysins and related proteins containing CBS domains.	0.521
ACPL_172	ACPL_174	ACPL_172	ACPL_174	fadF-like uncharacterized protein; Fe-S oxidoreductase.	yugS-like uncharacterized protein; Hemolysins and related proteins containing CBS domains.	0.521
ACPL_172	ACPL_2316	ACPL_172	ACPL_2316	fadF-like uncharacterized protein; Fe-S oxidoreductase.	Iron-sulfur cluster binding protein; Uncharacterized conserved protein containing a ferredoxin-like domain.	0.611
ACPL_172	ACPL_2317	ACPL_172	ACPL_2317	fadF-like uncharacterized protein; Fe-S oxidoreductase.	Uncharacterized conserved protein containing a ferredoxin-like domain.	0.525
ACPL_172	ACPL_4162	ACPL_172	ACPL_4162	fadF-like uncharacterized protein; Fe-S oxidoreductase.	Uncharacterized conserved protein containing a ferredoxin-like domain.	0.525
ACPL_172	ACPL_4163	ACPL_172	ACPL_4163	fadF-like uncharacterized protein; Fe-S oxidoreductase.	Iron-sulfur cluster binding protein; Uncharacterized conserved protein containing a ferredoxin-like domain.	0.611
ACPL_172	glpD	ACPL_172	ACPL_3763	fadF-like uncharacterized protein; Fe-S oxidoreductase.	Glycerol-3-phosphate dehydrogenase.	0.565
ACPL_172	glpD-2	ACPL_172	ACPL_3909	fadF-like uncharacterized protein; Fe-S oxidoreductase.	Glycerol-3-phosphate dehydrogenase.	0.565
ACPL_172	glpD-3	ACPL_172	ACPL_5625	fadF-like uncharacterized protein; Fe-S oxidoreductase.	Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.	0.565
ACPL_172	gpd2	ACPL_172	ACPL_7984	fadF-like uncharacterized protein; Fe-S oxidoreductase.	Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.	0.565
ACPL_173	ACPL_172	ACPL_173	ACPL_172	yugS-like uncharacterized protein; Hemolysins and related proteins containing CBS domains.	fadF-like uncharacterized protein; Fe-S oxidoreductase.	0.521
ACPL_173	ACPL_174	ACPL_173	ACPL_174	yugS-like uncharacterized protein; Hemolysins and related proteins containing CBS domains.	yugS-like uncharacterized protein; Hemolysins and related proteins containing CBS domains.	0.961
ACPL_174	ACPL_172	ACPL_174	ACPL_172	yugS-like uncharacterized protein; Hemolysins and related proteins containing CBS domains.	fadF-like uncharacterized protein; Fe-S oxidoreductase.	0.521
ACPL_174	ACPL_173	ACPL_174	ACPL_173	yugS-like uncharacterized protein; Hemolysins and related proteins containing CBS domains.	yugS-like uncharacterized protein; Hemolysins and related proteins containing CBS domains.	0.961
ACPL_2316	ACPL_172	ACPL_2316	ACPL_172	Iron-sulfur cluster binding protein; Uncharacterized conserved protein containing a ferredoxin-like domain.	fadF-like uncharacterized protein; Fe-S oxidoreductase.	0.611
ACPL_2316	ACPL_2317	ACPL_2316	ACPL_2317	Iron-sulfur cluster binding protein; Uncharacterized conserved protein containing a ferredoxin-like domain.	Uncharacterized conserved protein containing a ferredoxin-like domain.	0.992
ACPL_2316	ACPL_4162	ACPL_2316	ACPL_4162	Iron-sulfur cluster binding protein; Uncharacterized conserved protein containing a ferredoxin-like domain.	Uncharacterized conserved protein containing a ferredoxin-like domain.	0.969
ACPL_2317	ACPL_172	ACPL_2317	ACPL_172	Uncharacterized conserved protein containing a ferredoxin-like domain.	fadF-like uncharacterized protein; Fe-S oxidoreductase.	0.525
ACPL_2317	ACPL_2316	ACPL_2317	ACPL_2316	Uncharacterized conserved protein containing a ferredoxin-like domain.	Iron-sulfur cluster binding protein; Uncharacterized conserved protein containing a ferredoxin-like domain.	0.992
ACPL_2317	ACPL_4163	ACPL_2317	ACPL_4163	Uncharacterized conserved protein containing a ferredoxin-like domain.	Iron-sulfur cluster binding protein; Uncharacterized conserved protein containing a ferredoxin-like domain.	0.970