STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
occMABC-type amino acid transport system, permease component. (335 aa)    
Predicted Functional Partners:
atrC
ABC-type polar amino acid transport system, ATPase component.
 
 0.977
ACPL_1824
Membrane-bound lytic murein transglycosylase F; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.960
ACPL_2541
Polar amino acid transport system ATP-binding protein; ABC-type sugar transport systems, ATPase components.
 
 0.907
atrC-2
Polar amino acid transport system ATP-binding protein; ABC-type sugar transport systems, ATPase components.
 
 0.905
gluA
Glutamate transport system ATP-binding protein; ABC-type polar amino acid transport system, ATPase component.
 
 0.901
ACPL_6452
ABC-type polar amino acid transport system, ATPase component.
 
 0.899
ACPL_3784
Membrane-bound lytic murein transglycosylase F; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 
 0.854
aotJ-2
Membrane-bound lytic murein transglycosylase F; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 
 0.854
aotJ
Membrane-bound lytic murein transglycosylase F; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 
 0.849
ACPL_2540
Membrane-bound lytic murein transglycosylase F; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 
 0.843
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.