STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atrCABC-type polar amino acid transport system, ATPase component. (253 aa)    
Predicted Functional Partners:
occM
ABC-type amino acid transport system, permease component.
 
 0.977
ACPL_1824
Membrane-bound lytic murein transglycosylase F; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.960
occM-2
ABC-type amino acid transport system, permease component.
 
 
 0.930
gluD
ABC-type amino acid transport system, permease component.
 
 
 0.930
ACPL_3783
Inner membrane amino-acid ABC transporter permease protein yecS; ABC-type amino acid transport system, permease component.
 
 0.928
ACPL_2542
Inner membrane amino-acid ABC transporter permease protein yecS; ABC-type amino acid transport system, permease component.
 
 0.906
ACPL_6451
Inner membrane amino-acid ABC transporter permease protein yecS; ABC-type amino acid transport system, permease component.
 
 0.883
ACPL_3784
Membrane-bound lytic murein transglycosylase F; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 
 0.854
aotJ-2
Membrane-bound lytic murein transglycosylase F; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 
 0.853
aotJ
Membrane-bound lytic murein transglycosylase F; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 
 0.851
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.