STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csdBCysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. (409 aa)    
Predicted Functional Partners:
iscU
Similar to mitochondrial Iron sulfur cluster assembly protein 1; NifU homolog involved in Fe-S cluster formation.
 
 
 0.996
ACPL_1874
Spermidine/putrescine import ATP-binding protein potA; ABC-type oligopeptide transport system, ATPase component.
 
  
 0.991
sufB
ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 
 0.987
ACPL_1872
Uncharacterized protein; ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 
 0.986
ACPL_1877
yitW-like uncharacterized protein; Predicted metal-sulfur cluster biosynthetic enzyme.
 
  
 0.975
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
   
 0.908
ACPL_6856
Thioredoxin reductase.
  
 
 0.905
megL
Methionine-gamma-lyase; Cystathionine beta-lyases/cystathionine gamma-synthases.
     
 0.904
trxB
Thioredoxin reductase.
  
 
  0.904
metB
Cystathionine beta-lyases/cystathionine gamma-synthases.
     
 0.904
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
Server load: medium (62%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.