Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mtrRTranscriptional regulator. (192 aa)    
Predicted Functional Partners:
ACPL_7184
Laminin subunit beta-1; Phage shock protein A (IM30), suppresses sigma54-dependent transcription.
  
     0.745
ACPL_1311
Hypothetical protein.
  
     0.730
ACPL_1683
Hypothetical protein; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.726
ACPL_1362
Hypothetical protein.
  
     0.717
csm
T-protein.
  
    0.702
ACPL_7697
Hypothetical protein.
  
     0.699
ACPL_4336
Hypothetical protein; Predicted GTPases (dynamin-related).
  
     0.660
ACPL_1077
Predicted transcriptional regulators.
  
     0.630
ACPL_8351
Uncharacterized protein.
  
     0.612
ACPL_4337
Hypothetical protein; Translation elongation factors (GTPases).
  
     0.606
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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