Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
pepPXaa-Pro aminopeptidase. (490 aa)    
Predicted Functional Partners:
ACPL_1906
Cu/Zn superoxide dismutase.
   
 
 0.722
pepN-2
Aminopeptidase N.
 
 
 0.561
pepN-3
Aminopeptidase N.
 
 
 0.548
porA
Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.
     
 0.535
gltB
Glutamate synthase domain 2.
     
 0.507
pepN
Aminopeptidase N.
 
 
 0.498
frk2
Fructokinase; Sugar kinases, ribokinase family.
       0.486
hisS
Histidyl-tRNA synthetase.
 
 
 0.484
pepN-4
Aminopeptidase N.
 
 
 0.475
ACPL_870
IMP dehydrogenase/GMP reductase.
 
 
   0.466
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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