ACPL_1916 protein (Actinoplanes sp. SE50110)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACPL_1916

Two-component system sensor kinase; Signal transduction histidine kinase. (390 aa)

Predicted Functional Partners:

ACPL_1915

0.951

ACPL_5253

0.792

ACPL_6207

0.777

ACPL_4239

0.776

ACPL_7236

0.770

ACPL_1954

0.765

ACPL_2513

0.763

ACPL_5146

0.761

ACPL_5264

0.749

ACPL_5392

0.748

Your Current Organism:

Actinoplanes sp. SE50110

NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ACPL_1915	ACPL_1916	Transcriptional regulatory protein liaR; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	Two-component system sensor kinase; Signal transduction histidine kinase.	0.951
ACPL_1916	ACPL_1915	Two-component system sensor kinase; Signal transduction histidine kinase.	Transcriptional regulatory protein liaR; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	0.951
ACPL_1916	ACPL_1954	Two-component system sensor kinase; Signal transduction histidine kinase.	Transcriptional regulatory protein ydfI; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	0.765
ACPL_1916	ACPL_2513	Two-component system sensor kinase; Signal transduction histidine kinase.	Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	0.763
ACPL_1916	ACPL_4239	Two-component system sensor kinase; Signal transduction histidine kinase.	Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	0.776
ACPL_1916	ACPL_5146	Two-component system sensor kinase; Signal transduction histidine kinase.	Transcriptional regulatory protein desR; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	0.761
ACPL_1916	ACPL_5253	Two-component system sensor kinase; Signal transduction histidine kinase.	yxjL-like uncharacterized transcriptional regulatory protein; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	0.792
ACPL_1916	ACPL_5264	Two-component system sensor kinase; Signal transduction histidine kinase.	Transcriptional regulatory protein degU; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.	0.749
ACPL_1916	ACPL_5392	Two-component system sensor kinase; Signal transduction histidine kinase.	yxjL-like uncharacterized transcriptional regulatory protein; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	0.748
ACPL_1916	ACPL_6207	Two-component system sensor kinase; Signal transduction histidine kinase.	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	0.777
ACPL_1916	ACPL_7236	Two-component system sensor kinase; Signal transduction histidine kinase.	Nitrate/nitrite response regulator protein narP; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	0.770
ACPL_1954	ACPL_1916	Transcriptional regulatory protein ydfI; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	Two-component system sensor kinase; Signal transduction histidine kinase.	0.765
ACPL_2513	ACPL_1916	Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	Two-component system sensor kinase; Signal transduction histidine kinase.	0.763
ACPL_4239	ACPL_1916	Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	Two-component system sensor kinase; Signal transduction histidine kinase.	0.776
ACPL_5146	ACPL_1916	Transcriptional regulatory protein desR; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	Two-component system sensor kinase; Signal transduction histidine kinase.	0.761
ACPL_5253	ACPL_1916	yxjL-like uncharacterized transcriptional regulatory protein; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	Two-component system sensor kinase; Signal transduction histidine kinase.	0.792
ACPL_5264	ACPL_1916	Transcriptional regulatory protein degU; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.	Two-component system sensor kinase; Signal transduction histidine kinase.	0.749
ACPL_5392	ACPL_1916	yxjL-like uncharacterized transcriptional regulatory protein; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	Two-component system sensor kinase; Signal transduction histidine kinase.	0.748
ACPL_6207	ACPL_1916	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	Two-component system sensor kinase; Signal transduction histidine kinase.	0.777
ACPL_7236	ACPL_1916	Nitrate/nitrite response regulator protein narP; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.	Two-component system sensor kinase; Signal transduction histidine kinase.	0.770