Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_1926Hypothetical protein. (267 aa)    
Predicted Functional Partners:
ACPL_7117
Uncharacterized protein; DNA or RNA helicases of superfamily II.
  
     0.740
ACPL_1925
Uncharacterized protein.
 
     0.703
ACPL_7087
Hypothetical protein.
  
     0.633
ACPL_223
Hypothetical protein.
  
   
 0.619
ACPL_120
Uncharacterized protein; Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives.
  
     0.617
ACPL_5070
Predicted transcriptional regulators.
  
     0.568
ACPL_1924
NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding.
  
    0.561
ACPL_1519
Hypothetical protein.
  
     0.546
whiB
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.474
ACPL_7185
Predicted transcriptional regulators.
  
    0.439
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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