Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACPL_1967Protein of unknown function DUF88. (404 aa)    
Predicted Functional Partners:
ACPL_908
Endoglucanase H; Beta-mannanase; Belongs to the glycosyl hydrolase 26 family.
  
     0.690
ACPL_8206
Hypothetical protein.
  
   
 0.666
ACPL_8204
Hypothetical protein; Fibronectin type 3 domain-containing protein.
  
     0.649
ACPL_416
Hypothetical protein.
  
     0.641
ACPL_5342
Eukaryotic translation initiation factor 3 subunit A.
  
     0.633
ACPL_1968
Hypothetical protein.
       0.631
ACPL_469
Hypothetical protein.
  
     0.624
trmB
tRNA (guanine-N7-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.612
ACPL_2093
Nucleoporin; PPE-repeat proteins.
  
     0.608
ACPL_2095
Hypothetical protein.
  
     0.599
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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