Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACPL_2005Hypothetical protein; Cytidylate kinase. (184 aa)    
Predicted Functional Partners:
upp
Uracil phosphoribosyltransferase; Belongs to the UPRTase family.
  
 
 0.783
ACPL_2004
Prestalk A differentiation protein A; Predicted nucleoside-diphosphate-sugar epimerases.
       0.773
ACPL_2006
Formate dehydrogenase, alpha subunit; Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.773
ACPL_3161
Hypothetical protein.
    
 0.669
ACPL_6712
Serine/threonine protein kinase.
    
 0.669
ACPL_5267
Hypothetical protein.
    
  0.567
mesJ
tRNA(Ile)-lysidine synthase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
   
 
  0.559
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
 0.555
ddx5
DEAD/DEAH box helicase domain-containing protein; Superfamily II DNA and RNA helicases.
  
  0.547
deaD
Cold-shock DEAD box protein A; Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.
  
  0.547
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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