Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACPL_2023Camphene synthase; Similar to chloroplast protein. (342 aa)    
Predicted Functional Partners:
ACPL_2024
SAM-dependent methyltransferases.
 
   
 0.954
eshA
cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.
 
  
 0.870
ACPL_1184
Hypothetical protein.
  
     0.734
ACPL_1185
DNA replication and repair protein recF; Predicted ATP-binding protein involved in virulence.
  
     0.660
gltB
Glutamate synthase domain 2.
     
 0.627
ACPL_3086
Hypothetical protein.
 
     0.626
ACPL_4112
Lacticin 481/lactococcin biosynthesis protein lcnDR2; Lantibiotic modifying enzyme.
  
   
 0.568
ACPL_3254
Predicted membrane protein.
  
     0.543
ACPL_2135
Phytochrome A1; Signal transduction histidine kinase.
  
   
 0.535
ACPL_2025
Glycoside hydrolase 15-related protein; Glucoamylase and related glycosyl hydrolases.
       0.526
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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