STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_2039HTH-type transcriptional activator rhaS; AraC-type DNA-binding domain-containing proteins. (144 aa)    
Predicted Functional Partners:
ACPL_2040
yetH-like uncharacterized protein; Lactoylglutathione lyase and related lyases.
 
    0.963
dapA
Dihydrodipicolinate synthase/N-acetylneuraminate lyase; Belongs to the DapA family.
       0.655
nolO
Carbamoyltransferase; Predicted carbamoyl transferase, NodU family.
       0.596
ACPL_2036
Hypothetical protein.
       0.596
ACPL_2037
Uncharacterized protein conserved in bacteria.
       0.596
ACPL_3134
HTH-type transcriptional activator rhaS; AraC-type DNA-binding domain-containing proteins.
  
     0.569
ACPL_2743
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
  
 
 0.550
ACPL_5367
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
  
 
 0.540
ACPL_7008
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
  
 
 0.468
ACPL_4997
HTH-type transcriptional activator rhaR; AraC-type DNA-binding domain-containing proteins.
  
     0.462
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.