STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_2118Predicted transcriptional regulators. (156 aa)    
Predicted Functional Partners:
ACPL_2119
Hypothetical protein.
 
   
 0.942
ACPL_2117
Hypothetical protein.
       0.773
ACPL_329
Predicted transcriptional regulators.
  
     0.642
comA
Phospholipase D/transphosphatidylase; Phosphatidylserine/ phosphatidylglycerophosphate/cardiolipin synthases and related enzymes.
 
     0.582
soxR
Redox-sensitive transcriptional activator soxR; Predicted transcriptional regulators.
  
     0.575
ACPL_2120
Acetyltransferases, including N-acetylases of ribosomal proteins.
  
    0.545
ACPL_2423
HTH-type transcriptional activator tipA; Predicted transcriptional regulators.
  
     0.514
ACPL_1473
Predicted transcriptional regulators.
  
     0.484
holB
DNA polymerase III subunit delta; ATPase involved in DNA replication.
    
  0.456
dnaZ
DNA polymerase III, gamma/tau subunits.
    
  0.456
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.