Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_2159Predicted carboxypeptidase. (690 aa)    
Predicted Functional Partners:
ACPL_5053
Hypothetical protein.
  
     0.673
sucA
2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes.
    
  0.661
tas
Methyl-accepting chemotaxis protein.
       0.542
ACPL_1244
Zinc metalloprotease zmpB.
  
   
 0.538
ACPL_3796
Hypothetical protein; Predicted ATPase.
  
 
   0.535
ACPL_8145
HtpX-like probable protease; Zn-dependent protease with chaperone function.
  
   
 0.500
ACPL_6753
Neuroendocrine convertase 1; Subtilisin-like serine proteases.
 
     0.464
ACPL_5751
Protein piccolo.
  
     0.439
ACPL_3698
Adenylate cyclase, class 2.
  
     0.435
ACPL_6877
Uncharacterized protein conserved in bacteria.
  
     0.429
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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