STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nodB-2Predicted xylanase/chitin deacetylase. (522 aa)    
Predicted Functional Partners:
ACPL_2424
ylxY-like uncharacterized protein; Predicted xylanase/chitin deacetylase.
  
     0.735
ACPL_3444
Putative mannan synthase 9; Glycosyltransferases, probably involved in cell wall biogenesis.
 
    0.535
ACPL_2170
Hypothetical protein.
       0.505
acs
acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
    
  0.504
ACPL_7032
Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
    
  0.504
pltF
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
     
  0.499
ACPL_6080
Non-ribosomal peptide synthetase modules and related proteins.
     
  0.499
ACPL_6244
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
     
  0.499
tcsA-2
PAS/PAC sensor hybrid histidine kinase; Signal transduction histidine kinase.
       0.461
ACPL_2168
Hypothetical protein.
       0.461
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.