ACPL_2182 protein (Actinoplanes sp. SE50110)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACPL_2182

Uncharacterized protein; Permeases of the major facilitator superfamily. (413 aa)

Predicted Functional Partners:

ACPL_2183

0.773

ACPL_2184

0.773

ACPL_544

0.758

ACPL_4133

0.755

ACPL_2657

0.749

ACPL_539

0.736

ACPL_434

0.732

ACPL_1667

0.723

ACPL_2185

0.723

ACPL_6236

0.679

Your Current Organism:

Actinoplanes sp. SE50110

NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ACPL_1667	ACPL_2182	Putative bacilysin exporter bacE; Permeases of the major facilitator superfamily.	Uncharacterized protein; Permeases of the major facilitator superfamily.	0.723
ACPL_1667	ACPL_434	Putative bacilysin exporter bacE; Permeases of the major facilitator superfamily.	Permeases of the major facilitator superfamily.	0.758
ACPL_1667	ACPL_544	Putative bacilysin exporter bacE; Permeases of the major facilitator superfamily.	yfiS-like uncharacterized MFS-type transporter; Permeases of the major facilitator superfamily.	0.759
ACPL_2182	ACPL_1667	Uncharacterized protein; Permeases of the major facilitator superfamily.	Putative bacilysin exporter bacE; Permeases of the major facilitator superfamily.	0.723
ACPL_2182	ACPL_2183	Uncharacterized protein; Permeases of the major facilitator superfamily.	Hypothetical protein.	0.773
ACPL_2182	ACPL_2184	Uncharacterized protein; Permeases of the major facilitator superfamily.	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).	0.773
ACPL_2182	ACPL_2185	Uncharacterized protein; Permeases of the major facilitator superfamily.	Cytochrome P450 protein.	0.723
ACPL_2182	ACPL_2657	Uncharacterized protein; Permeases of the major facilitator superfamily.	yfmI-like uncharacterized MFS-type transporter; Permeases of the major facilitator superfamily.	0.749
ACPL_2182	ACPL_4133	Uncharacterized protein; Permeases of the major facilitator superfamily.	yfiS-like uncharacterized MFS-type transporter; Permeases of the major facilitator superfamily.	0.755
ACPL_2182	ACPL_434	Uncharacterized protein; Permeases of the major facilitator superfamily.	Permeases of the major facilitator superfamily.	0.732
ACPL_2182	ACPL_539	Uncharacterized protein; Permeases of the major facilitator superfamily.	Permeases of the major facilitator superfamily.	0.736
ACPL_2182	ACPL_544	Uncharacterized protein; Permeases of the major facilitator superfamily.	yfiS-like uncharacterized MFS-type transporter; Permeases of the major facilitator superfamily.	0.758
ACPL_2182	ACPL_6236	Uncharacterized protein; Permeases of the major facilitator superfamily.	Enterobactin exporter entS; Permeases of the major facilitator superfamily.	0.679
ACPL_2183	ACPL_2182	Hypothetical protein.	Uncharacterized protein; Permeases of the major facilitator superfamily.	0.773
ACPL_2183	ACPL_2184	Hypothetical protein.	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).	0.773
ACPL_2183	ACPL_2185	Hypothetical protein.	Cytochrome P450 protein.	0.723
ACPL_2184	ACPL_2182	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).	Uncharacterized protein; Permeases of the major facilitator superfamily.	0.773
ACPL_2184	ACPL_2183	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).	Hypothetical protein.	0.773
ACPL_2184	ACPL_2185	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).	Cytochrome P450 protein.	0.736
ACPL_2185	ACPL_2182	Cytochrome P450 protein.	Uncharacterized protein; Permeases of the major facilitator superfamily.	0.723