Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
oppBABC-type dipeptide/oligopeptide/nickel transport systems, permease components. (332 aa)    
Predicted Functional Partners:
oppC
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.995
oppD
Glutathione import ATP-binding protein gsiA; ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
 
 0.995
ACPL_6678
Methionine import ATP-binding protein metN; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 0.994
ACPL_2191
Periplasmic oligopeptide-binding protein; ABC-type dipeptide transport system, periplasmic component.
 
 0.992
ACPL_5611
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.924
appC
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.924
dppC
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.923
dppC-2
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.923
ACPL_2953
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.921
ACPL_886
Methionine import ATP-binding protein metN; ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 0.919
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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