Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_2212Hypothetical protein; Uncharacterized homolog of phage Mu protein gp47. (647 aa)    
Predicted Functional Partners:
ACPL_2213
Phage baseplate assembly protein W.
 
 
 0.996
ACPL_2216
Uncharacterized protein containing LysM domain.
 
 
 0.993
ACPL_2222
Phage tail sheath protein FI.
 
 
 0.986
ACPL_2211
Phage tail protein.
  
 
 0.968
ACPL_2218
Hypothetical protein.
 
 
 
 0.966
ACPL_2221
Hypothetical protein.
 
 
 
 0.963
ACPL_2215
Rhs element Vgr protein; Uncharacterized protein conserved in bacteria.
 
   
 0.952
ACPL_5886
Otogelin; HRD ubiquitin ligase complex, ER membrane component.
  
 
 0.888
ACPL_2214
Hypothetical protein.
 
     0.883
ACPL_2225
ATPase central domain-containing protein; ATPases of the AAA+ class.
 
     0.809
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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