STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_2281Selenocysteine lyase. (408 aa)    
Predicted Functional Partners:
iscU
Similar to mitochondrial Iron sulfur cluster assembly protein 1; NifU homolog involved in Fe-S cluster formation.
 
 
 0.958
ACPL_1874
Spermidine/putrescine import ATP-binding protein potA; ABC-type oligopeptide transport system, ATPase component.
 
  
 0.923
sufB
ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 
 0.917
ACPL_1872
Uncharacterized protein; ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 
 0.907
sufE
SufE protein probably involved in Fe-S center assembly.
  
 
 0.631
ACPL_4950
Cysteine desulfurase family protein; Selenocysteine lyase.
  
  
 
0.626
ACPL_1877
yitW-like uncharacterized protein; Predicted metal-sulfur cluster biosynthetic enzyme.
 
  
 0.625
csdB
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
  
 
0.608
ACPL_7393
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
    
0.547
ACPL_2280
Hypothetical protein.
       0.494
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.