STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdgRPectin degradation repressor protein kdgR; Transcriptional regulator. (257 aa)    
Predicted Functional Partners:
lamA
Biotin carboxylase.
  
    0.870
ssfR
Acetate operon repressor; Transcriptional regulator.
  
     0.741
ACPL_7348
HTH-type transcriptional repressor allR; Transcriptional regulator.
  
     0.710
ACPL_2353
Putative aliphatic sulfonates-binding protein; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
     0.604
pcaH
Protocatechuate 3,4-dioxygenase beta subunit.
 
   
 0.592
pcaG
Protocatechuate 3,4-dioxygenase beta subunit.
 
  
 0.571
ACPL_2351
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
       0.544
ACPL_2352
Putative aliphatic sulfonates transport permease protein ssuC; ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
       0.544
ACPL_2350
Spermidine/putrescine import ATP-binding protein potA; ABC-type sugar transport systems, ATPase components.
       0.540
ACPL_2370
4-carboxymuconolactone decarboxylase; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
   
 0.530
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.