Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
allRHTH-type transcriptional repressor allR; Transcriptional regulator. (246 aa)    
Predicted Functional Partners:
lamA
Biotin carboxylase.
  
  
 0.888
pobA
P-hydroxybenzoate 3-monooxygenase; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
 
   
 0.735
ACPL_2370
4-carboxymuconolactone decarboxylase; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
   
 0.707
pcaG
Protocatechuate 3,4-dioxygenase beta subunit.
 
  
 0.701
pcaH
Protocatechuate 3,4-dioxygenase beta subunit.
 
   
 0.689
pcaB
3-carboxy-cis,cis-muconate cycloisomerase; Adenylosuccinate lyase.
 
   
 0.680
ssfR
Acetate operon repressor; Transcriptional regulator.
  
     0.650
ACPL_4171
Fatty acid metabolism regulator protein; Transcriptional regulators.
  
  
 0.558
dgoR
Fatty acid metabolism regulator protein; Transcriptional regulators.
  
  
 0.542
ACPL_4174
Transcriptional regulators.
  
  
 0.541
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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