STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
allRHTH-type transcriptional repressor allR; Transcriptional regulator. (246 aa)    
Predicted Functional Partners:
lamA
Biotin carboxylase.
  
    0.870
pobA
P-hydroxybenzoate 3-monooxygenase; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
 
   
 0.738
ACPL_2370
4-carboxymuconolactone decarboxylase; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
   
 0.712
pcaG
Protocatechuate 3,4-dioxygenase beta subunit.
 
  
 0.696
pcaH
Protocatechuate 3,4-dioxygenase beta subunit.
 
   
 0.685
pcaB
3-carboxy-cis,cis-muconate cycloisomerase; Adenylosuccinate lyase.
 
   
 0.676
ssfR
Acetate operon repressor; Transcriptional regulator.
  
     0.650
ACPL_4171
Fatty acid metabolism regulator protein; Transcriptional regulators.
  
  
 0.546
dgoR
Fatty acid metabolism regulator protein; Transcriptional regulators.
  
  
 0.529
ACPL_4174
Transcriptional regulators.
  
  
 0.528
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.