ACPL_2409 protein (Actinoplanes sp. SE50110)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACPL_2409

YkuD-like spore protein; Uncharacterized protein conserved in bacteria. (286 aa)

Predicted Functional Partners:

ACPL_1419

0.713

ACPL_7046

0.680

ACPL_2093

0.613

ACPL_416

0.612

ACPL_142

0.586

ACPL_2795

0.585

ACPL_770

0.574

ACPL_908

0.574

ACPL_278

0.565

ACPL_5723

0.554

Your Current Organism:

Actinoplanes sp. SE50110

NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ACPL_1419	ACPL_2093	Protein liaG.	Nucleoporin; PPE-repeat proteins.	0.410
ACPL_1419	ACPL_2409	Protein liaG.	YkuD-like spore protein; Uncharacterized protein conserved in bacteria.	0.713
ACPL_1419	ACPL_416	Protein liaG.	Hypothetical protein.	0.513
ACPL_1419	ACPL_5723	Protein liaG.	HTH-type transcriptional repressor Bm3R1; Transcriptional regulator.	0.460
ACPL_1419	ACPL_7046	Protein liaG.	[Protein-PII] uridylyltransferase; Malic enzyme.	0.538
ACPL_1419	ACPL_770	Protein liaG.	Hypothetical protein.	0.546
ACPL_142	ACPL_2409	Hypothetical protein; FOG: TPR repeat.	YkuD-like spore protein; Uncharacterized protein conserved in bacteria.	0.586
ACPL_2093	ACPL_1419	Nucleoporin; PPE-repeat proteins.	Protein liaG.	0.410
ACPL_2093	ACPL_2409	Nucleoporin; PPE-repeat proteins.	YkuD-like spore protein; Uncharacterized protein conserved in bacteria.	0.613
ACPL_2093	ACPL_2795	Nucleoporin; PPE-repeat proteins.	Serine/threonine-protein kinase MRCK gamma; Methyl-accepting chemotaxis protein.	0.662
ACPL_2093	ACPL_416	Nucleoporin; PPE-repeat proteins.	Hypothetical protein.	0.621
ACPL_2093	ACPL_5723	Nucleoporin; PPE-repeat proteins.	HTH-type transcriptional repressor Bm3R1; Transcriptional regulator.	0.530
ACPL_2093	ACPL_7046	Nucleoporin; PPE-repeat proteins.	[Protein-PII] uridylyltransferase; Malic enzyme.	0.620
ACPL_2093	ACPL_770	Nucleoporin; PPE-repeat proteins.	Hypothetical protein.	0.611
ACPL_2093	ACPL_908	Nucleoporin; PPE-repeat proteins.	Endoglucanase H; Beta-mannanase; Belongs to the glycosyl hydrolase 26 family.	0.625
ACPL_2409	ACPL_1419	YkuD-like spore protein; Uncharacterized protein conserved in bacteria.	Protein liaG.	0.713
ACPL_2409	ACPL_142	YkuD-like spore protein; Uncharacterized protein conserved in bacteria.	Hypothetical protein; FOG: TPR repeat.	0.586
ACPL_2409	ACPL_2093	YkuD-like spore protein; Uncharacterized protein conserved in bacteria.	Nucleoporin; PPE-repeat proteins.	0.613
ACPL_2409	ACPL_278	YkuD-like spore protein; Uncharacterized protein conserved in bacteria.	D-alanyl-D-alanine carboxypeptidase.	0.565
ACPL_2409	ACPL_2795	YkuD-like spore protein; Uncharacterized protein conserved in bacteria.	Serine/threonine-protein kinase MRCK gamma; Methyl-accepting chemotaxis protein.	0.585