STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_2424ylxY-like uncharacterized protein; Predicted xylanase/chitin deacetylase. (275 aa)    
Predicted Functional Partners:
ACPL_4824
Putative 30.6 kDa protein in fumA 3'region; Predicted xylanase/chitin deacetylase.
  
     0.740
nodB
Predicted xylanase/chitin deacetylase.
  
     0.738
nodB-2
Predicted xylanase/chitin deacetylase.
  
     0.735
ACPL_7527
Predicted xylanase/chitin deacetylase.
  
   
 0.734
ACPL_2422
Putative MFS-type transporter; Permeases of the major facilitator superfamily.
       0.634
ACPL_2423
HTH-type transcriptional activator tipA; Predicted transcriptional regulators.
       0.634
ACPL_2425
Hypothetical protein.
       0.542
ACPL_7803
Putative xyloglucan glycosyltransferase 9; Glycosyltransferases, probably involved in cell wall biogenesis.
  
    0.410
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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