STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbiMProtein cbiM; ABC-type Co2+ transport system, permease component. (228 aa)    
Predicted Functional Partners:
ACPL_2440
Uncharacterized protein; ABC-type cobalt transport system, permease component CbiQ and related transporters.
 
 0.999
ACPL_2439
Phosphate import ATP-binding protein pstB; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
 
 0.998
ACPL_2441
Hypothetical protein.
 
  
  0.989
cobE
Protein cobE; Cobalamin biosynthesis protein CbiG.
  
  
 0.846
ACPL_1427
Putative permease ybaF; ABC-type cobalt transport system, permease component CbiQ and related transporters.
  
 
 0.843
ACPL_4834
NCAIR mutase (PurE)-related proteins.
 
    0.709
cobK
Precorrin-6x reductase.
  
  
 0.707
ACPL_3389
GMP synthase; Glutamine-hydrolyzing; ATP-utilizing enzymes of the PP-loop superfamily.
 
    0.695
cobI
Precorrin-2 C20-methyltransferase / precorrin-3B C17-methyltransferase; Precorrin-3B methylase.
  
  
 0.636
cobL
precorrin-6Y C5,15-methyltransferase / precorrin-8W decarboxylase; Precorrin-6B methylase 1.
  
  
 0.597
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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