Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rhaIPredicted sugar isomerase. (383 aa)    
Predicted Functional Partners:
rhaB
Rhamnulokinase; Glycerol kinase.
 
  
 0.980
ACPL_2454
Autoinducer 2-binding protein lsrB; ABC-type sugar transport system, periplasmic component.
 
     0.899
rhaD
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
   
 0.837
rbsC-2
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
       0.787
ACPL_2453
Ribose transport system ATP-binding protein; ATPase components of various ABC-type transport systems, contain duplicated ATPase.
       0.783
lsrC
Autoinducer 2 import system permease protein lsrC; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
       0.782
ACPL_2732
alpha-L-rhamnosidase.
 
     0.715
ACPL_8194
Putative endonuclease 4; Sugar phosphate isomerases/epimerases.
  
   
 0.580
ACPL_8195
Hypothetical protein.
  
     0.571
ACPL_4170
Autoinducer 2-binding protein lsrB; ABC-type sugar transport system, periplasmic component.
 
     0.563
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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