STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaIPredicted sugar isomerase. (383 aa)    
Predicted Functional Partners:
rhaB
Rhamnulokinase; Glycerol kinase.
 
  
 0.986
ACPL_2454
Autoinducer 2-binding protein lsrB; ABC-type sugar transport system, periplasmic component.
 
     0.900
rhaD
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
     0.835
rbsC-2
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
       0.790
ACPL_2453
Ribose transport system ATP-binding protein; ATPase components of various ABC-type transport systems, contain duplicated ATPase.
       0.788
lsrC
Autoinducer 2 import system permease protein lsrC; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
       0.787
ACPL_2732
alpha-L-rhamnosidase.
 
   
 0.718
ACPL_8194
Putative endonuclease 4; Sugar phosphate isomerases/epimerases.
 
   
 0.579
ACPL_8195
Hypothetical protein.
  
     0.571
ACPL_4170
Autoinducer 2-binding protein lsrB; ABC-type sugar transport system, periplasmic component.
 
     0.562
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.