STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lsrCAutoinducer 2 import system permease protein lsrC; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components. (343 aa)    
Predicted Functional Partners:
ACPL_2453
Ribose transport system ATP-binding protein; ATPase components of various ABC-type transport systems, contain duplicated ATPase.
 
 0.967
ACPL_2454
Autoinducer 2-binding protein lsrB; ABC-type sugar transport system, periplasmic component.
 
 
 0.964
ACPL_2041
HTH-type transcriptional repressor purR; Transcriptional regulators.
 
 0.858
rbsA
Ribose transport system ATP-binding protein; ATPase components of various ABC-type transport systems, contain duplicated ATPase.
 
 0.854
rbsA-2
Ribose transport system ATP-binding protein; ATPase components of various ABC-type transport systems, contain duplicated ATPase.
 
 0.850
ACPL_5444
Simple sugar transport system ATP-binding protein; ATPase components of various ABC-type transport systems, contain duplicated ATPase.
 
 0.846
rbsC-2
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
    
0.843
ACPL_5445
HTH-type transcriptional repressor purR; Transcriptional regulators.
 
 0.811
araG-2
L-arabinose transport ATP-binding protein araG; ABC-type sugar transport system, ATPase component.
 
 0.793
rhaI
Predicted sugar isomerase.
       0.787
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.