STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_2454Autoinducer 2-binding protein lsrB; ABC-type sugar transport system, periplasmic component. (342 aa)    
Predicted Functional Partners:
ACPL_2453
Ribose transport system ATP-binding protein; ATPase components of various ABC-type transport systems, contain duplicated ATPase.
 
 0.984
ACPL_4169
Monosaccharide-transporting ATPase; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 0.978
lsrC-2
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 0.965
lsrC
Autoinducer 2 import system permease protein lsrC; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
 
 0.964
rbsC-2
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
 
 0.963
ACPL_4170
Autoinducer 2-binding protein lsrB; ABC-type sugar transport system, periplasmic component.
  
  
 
0.923
rbsA-2
Ribose transport system ATP-binding protein; ATPase components of various ABC-type transport systems, contain duplicated ATPase.
 
 0.915
rhaI
Predicted sugar isomerase.
 
     0.900
ACPL_2043
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
 0.796
rbsC
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
 0.796
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.