Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_2608Hypothetical protein. (168 aa)    
Predicted Functional Partners:
abfB-2
Arabinofuranosidase.
  
     0.629
ACPL_3002
Hypothetical protein.
  
     0.615
abfB-3
Arabinofuranosidase.
  
     0.604
glcI-2
Glucan endo-1,3-beta-D-glucosidase.
  
  
  0.603
ACPL_2607
Hypothetical protein; SAM-dependent methyltransferases.
       0.552
ACPL_7193
Streptogrisin C; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
  
     0.543
ACPL_6762
Hypothetical protein.
  
     0.542
ACPL_8125
Uncharacterized protein conserved in bacteria.
  
     0.520
ACPL_2412
Hypothetical protein; 2'-5' RNA ligase.
  
     0.501
sprD
Streptogrisin-D; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
  
     0.488
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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