ACPL_2725 protein (Actinoplanes sp. SE50110)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACPL_2725

ycgR-like uncharacterized protein; Predicted permeases. (335 aa)

Predicted Functional Partners:

ACPL_2724

0.968

ACPL_270

0.864

cheR

0.558

ACPL_2633

0.487

ACPL_3955

0.487

ACPL_4570

0.487

ACPL_348

0.458

ACPL_6716

0.457

ACPL_7376

0.457

trmB

0.455

Your Current Organism:

Actinoplanes sp. SE50110

NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACPL_2633	ACPL_2725	ACPL_2633	ACPL_2725	Uncharacterized protein; Predicted nucleoside-diphosphate-sugar epimerases.	ycgR-like uncharacterized protein; Predicted permeases.	0.487
ACPL_270	ACPL_2725	ACPL_270	ACPL_2725	ycgQ-like uncharacterized protein; Predicted membrane protein.	ycgR-like uncharacterized protein; Predicted permeases.	0.864
ACPL_270	ACPL_348	ACPL_270	ACPL_348	ycgQ-like uncharacterized protein; Predicted membrane protein.	Teneurin-3; Rhs family protein.	0.508
ACPL_2724	ACPL_2725	ACPL_2724	ACPL_2725	Predicted membrane protein.	ycgR-like uncharacterized protein; Predicted permeases.	0.968
ACPL_2724	ACPL_348	ACPL_2724	ACPL_348	Predicted membrane protein.	Teneurin-3; Rhs family protein.	0.496
ACPL_2724	cheR	ACPL_2724	ACPL_2726	Predicted membrane protein.	Methylase of chemotaxis methyl-accepting proteins.	0.558
ACPL_2725	ACPL_2633	ACPL_2725	ACPL_2633	ycgR-like uncharacterized protein; Predicted permeases.	Uncharacterized protein; Predicted nucleoside-diphosphate-sugar epimerases.	0.487
ACPL_2725	ACPL_270	ACPL_2725	ACPL_270	ycgR-like uncharacterized protein; Predicted permeases.	ycgQ-like uncharacterized protein; Predicted membrane protein.	0.864
ACPL_2725	ACPL_2724	ACPL_2725	ACPL_2724	ycgR-like uncharacterized protein; Predicted permeases.	Predicted membrane protein.	0.968
ACPL_2725	ACPL_348	ACPL_2725	ACPL_348	ycgR-like uncharacterized protein; Predicted permeases.	Teneurin-3; Rhs family protein.	0.458
ACPL_2725	ACPL_3955	ACPL_2725	ACPL_3955	ycgR-like uncharacterized protein; Predicted permeases.	Putative NADH-flavin reductase.	0.487
ACPL_2725	ACPL_4570	ACPL_2725	ACPL_4570	ycgR-like uncharacterized protein; Predicted permeases.	Flavin reductase; Nucleoside-diphosphate-sugar epimerases.	0.487
ACPL_2725	ACPL_6716	ACPL_2725	ACPL_6716	ycgR-like uncharacterized protein; Predicted permeases.	Laccase-12; Putative multicopper oxidases.	0.457
ACPL_2725	ACPL_7376	ACPL_2725	ACPL_7376	ycgR-like uncharacterized protein; Predicted permeases.	Putative multicopper oxidase.	0.457
ACPL_2725	cheR	ACPL_2725	ACPL_2726	ycgR-like uncharacterized protein; Predicted permeases.	Methylase of chemotaxis methyl-accepting proteins.	0.558
ACPL_2725	trmB	ACPL_2725	ACPL_6639	ycgR-like uncharacterized protein; Predicted permeases.	tRNA (guanine-N7-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	0.455
ACPL_348	ACPL_270	ACPL_348	ACPL_270	Teneurin-3; Rhs family protein.	ycgQ-like uncharacterized protein; Predicted membrane protein.	0.508
ACPL_348	ACPL_2724	ACPL_348	ACPL_2724	Teneurin-3; Rhs family protein.	Predicted membrane protein.	0.496
ACPL_348	ACPL_2725	ACPL_348	ACPL_2725	Teneurin-3; Rhs family protein.	ycgR-like uncharacterized protein; Predicted permeases.	0.458
ACPL_3955	ACPL_2725	ACPL_3955	ACPL_2725	Putative NADH-flavin reductase.	ycgR-like uncharacterized protein; Predicted permeases.	0.487