STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kipIAllophanate hydrolase subunit 1. (204 aa)    
Predicted Functional Partners:
kipA
Allophanate hydrolase subunit 2.
 
 0.999
pxpA
Uncharacterized protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
 0.991
lamA
Biotin carboxylase.
  
 0.987
aac
Aminoglycoside 2'-N-acetyltransferase; Predicted acyltransferase.
  
  
 0.629
ACPL_2735
Shikimate transporter; Permeases of the major facilitator superfamily.
       0.565
ACPL_6109
ycgI-like uncharacterized protein.
    
 0.559
ACPL_6110
Hypothetical protein.
    
 0.559
ACPL_424
Vitamin B12-binding protein; ABC-type Fe3+-hydroxamate transport system, periplasmic component.
     
 0.515
kdgR
Pectin degradation repressor protein kdgR; Transcriptional regulator.
  
    0.487
allR
HTH-type transcriptional repressor allR; Transcriptional regulator.
  
    0.487
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.