STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaIPhenylacetic acid degradation protein paaC. (293 aa)    
Predicted Functional Partners:
paaB
Phenylacetic acid degradation protein paaB; Uncharacterized enzyme of phenylacetate metabolism.
 
 0.999
paaA
phenylacetate-CoA oxygenase subunit PaaA.
  
  0.998
paaK
Phenylacetic acid degradation NADH oxidoreductase; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
 0.996
paaD
Phenylacetic acid degradation protein paaD; Predicted metal-sulfur cluster biosynthetic enzyme.
 
 
 0.996
chcB
Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.945
ACPL_5517
Enoyl-CoA hydratase/carnithine racemase.
  
 
 0.918
ACPL_2912
Retinal dehydrogenase 1; NAD-dependent aldehyde dehydrogenases.
 
  
 0.903
ACPL_2913
Transcriptional regulator.
 
     0.811
paaX
Phenylacetic acid degradation operon negative regulatory protein paaX; Phenylacetic acid-responsive transcriptional repressor.
 
  
 0.596
ACPL_5396
Oxidoreductase FAD-binding domain protein; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 
 0.541
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.