Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_2947Hypothetical protein. (212 aa)    
Predicted Functional Partners:
ACPL_1400
Diguanylate cyclase; FOG: PAS/PAC domain.
  
     0.639
ACPL_1464
Hypothetical protein.
  
     0.598
ACPL_2946
Transcriptional regulator/sugar kinase.
       0.598
ACPL_6919
Glutamine amidotransferase subunit pdxT.
  
 
  0.571
ACPL_2080
Hypothetical protein.
  
     0.555
ACPL_1144
Hypothetical protein.
  
     0.542
ACPL_6911
Collagen alpha-4(VI) chain; Secreted and surface protein containing fasciclin-like repeats.
  
 0.517
ACPL_5641
Putative lipopolysaccharide biosynthesis protein; Lipid A core - O-antigen ligase and related enzymes.
  
     0.497
ACPL_6918
Phosphoglycolate phosphatase 1; Predicted phosphatases.
  
     0.494
hstK
Serine/threonine protein kinase; Predicted ATPase.
 
  
 0.489
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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