STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_298Transposase B; Integrase. (598 aa)    
Predicted Functional Partners:
ACPL_297
Hypothetical protein.
       0.835
ACPL_4015
Signal transduction protein; Predicted NTPase (NACHT family).
  
     0.712
ACPL_5919
Transposase and inactivated derivatives.
 
   
 0.650
ACPL_5771
Hypothetical protein.
  
     0.596
fn1
Fibronectin; RTX toxins and related Ca2+-binding proteins.
  
     0.557
ACPL_299
Integrase family protein; Integrase.
       0.547
ACPL_5774
Hypothetical protein.
  
     0.543
ACPL_6266
IS6 family transposase; Transposase and inactivated derivatives.
 
   
 0.501
ACPL_3706
Hypothetical protein.
  
     0.494
ACPL_3352
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); FOG: GAF domain.
 
    0.492
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.