STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xysAEndo-1,4-beta-xylanase; Beta-1,4-xylanase. (452 aa)    
Predicted Functional Partners:
xlnB
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.759
ACPL_3011
Hypothetical protein; Poly(3-hydroxybutyrate) depolymerase.
 
  
0.753
ACPL_5020
Pectate lyase.
  
   
 0.747
ACPL_2104
Hypothetical protein.
 
     0.722
ACPL_6174
Poly(3-hydroxybutyrate) depolymerase.
 
   0.705
ACPL_3007
Hypothetical protein.
 
   
 0.687
ACPL_3008
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.680
abnA
Arabinan endo-1,5-alpha-L-arabinosidase; Beta-xylosidase.
 
   
 0.673
celY
Exoglucanase-2; RTX toxins and related Ca2+-binding proteins.
 
   
 0.663
pel
Pectate lyase/Amb allergen; Pectate lyase.
  
   
 0.632
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.