Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_3053Hypothetical protein. (582 aa)    
Predicted Functional Partners:
sucA
2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes.
    
 
 0.911
ACPL_165
Serine/threonine protein kinase.
   
 
 0.801
pknB
Serine/threonine protein kinase.
   
 
 0.801
ACPL_1703
Serine/threonine protein kinase.
   
 
 0.801
ACPL_7501
Serine/threonine protein kinase.
   
 
 0.801
ACPL_3054
Hypothetical protein.
       0.773
ACPL_4368
Hypothetical protein; Siderophore synthetase component.
  
     0.625
ACPL_7920
Flagellar motor switch/type III secretory pathway protein.
  
 
 0.611
agmQ
Glutamyl endopeptidase; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
  
     0.584
ACPL_7410
NAD-specific glutamate dehydrogenase.
    
 
 0.533
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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