STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_3108Glycogen synthase; Glycosyltransferase. (414 aa)    
Predicted Functional Partners:
ACPL_3107
Glycosyltransferases involved in cell wall biogenesis.
 
   0.867
yxkH
Predicted xylanase/chitin deacetylase.
 
     0.821
glgB-2
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.752
ACPL_3112
Lipopolysaccharide biosynthesis protein wzxC; Membrane protein involved in the export of O-antigen and teichoic acid.
 
  
 0.722
ACPL_3115
Uncharacterized protein contain chitin-binding domain type 3.
 
     0.708
ACPL_3111
O-antigen polymerase.
 
  
 0.691
ACPL_3109
Hypothetical protein.
       0.592
ACPL_3110
Hypothetical protein.
 
     0.574
ACPL_3132
NAD-dependent epimerase/dehydratase; Nucleoside-diphosphate-sugar epimerases.
  
    0.564
acbR
1-epi-valienol-1, 7-bisphosphate-1-adenylyltransferase.
    
 0.548
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.