STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_3185Oxygen sensor histidine kinase nreB; Signal transduction histidine kinase. (377 aa)    
Predicted Functional Partners:
ACPL_3186
Transcriptional regulatory protein degU; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
 
 0.872
ACPL_4563
Signal transduction histidine kinase.
  
     0.600
ACPL_5264
Transcriptional regulatory protein degU; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
 
 0.592
ACPL_4298
Two-component system, NarL family, sensor histidine kinase DesK; Signal transduction histidine kinase.
  
     0.584
ACPL_6579
Signal transduction histidine kinase.
  
     0.563
ACPL_5392
yxjL-like uncharacterized transcriptional regulatory protein; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
 
 0.547
ACPL_3184
Hypothetical protein.
       0.544
ACPL_5253
yxjL-like uncharacterized transcriptional regulatory protein; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
 
 0.508
ACPL_1954
Transcriptional regulatory protein ydfI; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
 
 0.495
ACPL_6207
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
 
 0.493
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.