STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_3214Spermidine/putrescine import ATP-binding protein potA; ABC-type sugar transport systems, ATPase components. (339 aa)    
Predicted Functional Partners:
ACPL_3216
ABC-type uncharacterized transport system, permease component.
 
  
 0.973
ACPL_3215
ABC-type uncharacterized transport system, permease component.
 
  
 0.957
ACPL_5013
Predicted membrane protein.
 
  
 0.847
acbX
ABC transporter permease protein.
 
  
 0.819
ACPL_5012
Protein of unknown function DUF990; ABC-type uncharacterized transport system, permease component.
 
  
 0.819
ACPL_1629
ABC-type uncharacterized transport system, permease component.
 
  
 0.816
ACPL_1630
ABC-type uncharacterized transport system, permease component.
 
  
 0.800
acbY
ABC transporter permease protein.
 
  
 0.800
galE
NAD-dependent epimerase/dehydratase; UDP-glucose 4-epimerase.
       0.508
ACPL_3217
Hypothetical protein.
       0.457
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.