STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glcAGlycoside hydrolase family 16; Beta-glucanase/Beta-glucan synthetase. (642 aa)    
Predicted Functional Partners:
pcaI
Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
       0.773
pcaJ
Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
       0.773
allR-2
HTH-type transcriptional repressor allR; Transcriptional regulator.
       0.544
ACPL_4779
Beta-agarase AgaB34; O-Glycosyl hydrolase.
 
     0.491
ACPL_3246
Hypothetical protein.
       0.489
ACPL_1036
Glucosylceramidase; O-Glycosyl hydrolase; Belongs to the glycosyl hydrolase 30 family.
 
   
 0.464
ACPL_4966
Hypothetical protein; FOG: PKD repeat.
 
   
 0.449
gba
Glucosylceramidase; O-Glycosyl hydrolase; Belongs to the glycosyl hydrolase 30 family.
 
   
 0.448
chiD
Chitinase; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.435
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.