Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_3344Hypothetical protein. (182 aa)    
Predicted Functional Partners:
ACPL_3345
Hypothetical protein.
       0.773
ACPL_3343
Hypothetical protein.
       0.757
ACPL_5051
Hypothetical protein.
  
     0.685
ACPL_5035
Conserved repeat domain protein.
  
 0.666
ACPL_4900
Hypothetical protein.
  
     0.661
ACPL_3086
Hypothetical protein.
  
    0.587
ACPL_5787
Site-specific DNA methylase.
  
     0.544
ACPL_6683
Uncharacterized conserved protein, contains double-stranded beta-helix domain.
  
     0.541
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 0.539
ACPL_3342
MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein; Permeases of the major facilitator superfamily.
  
    0.530
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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