ACPL_3397 protein (Actinoplanes sp. SE50110)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACPL_3397

Biofilm architecture maintenance protein mbaA; FOG: GGDEF domain. (488 aa)

Predicted Functional Partners:

ACPL_3398

0.837

ACPL_5711

0.780

ACPL_3512

0.774

ACPL_5361

0.756

ACPL_4813

0.750

ACPL_762

0.705

ACPL_5521

0.690

ACPL_1150

0.686

cckA

0.674

ACPL_3288

0.672

Your Current Organism:

Actinoplanes sp. SE50110

NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACPL_1150	ACPL_3288	ACPL_1150	ACPL_3288	y4lL-like uncharacterized protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	Phytochrome-like protein cph2; FOG: EAL domain.	0.761
ACPL_1150	ACPL_3397	ACPL_1150	ACPL_3397	y4lL-like uncharacterized protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	Biofilm architecture maintenance protein mbaA; FOG: GGDEF domain.	0.686
ACPL_1150	ACPL_3398	ACPL_1150	ACPL_3398	y4lL-like uncharacterized protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	Putative signaling protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	0.543
ACPL_1150	ACPL_3512	ACPL_1150	ACPL_3512	y4lL-like uncharacterized protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	Putative signaling protein; FOG: GGDEF domain.	0.792
ACPL_1150	ACPL_4813	ACPL_1150	ACPL_4813	y4lL-like uncharacterized protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	Putative signaling protein; FOG: EAL domain.	0.783
ACPL_1150	ACPL_5361	ACPL_1150	ACPL_5361	y4lL-like uncharacterized protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	Putative signaling protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	0.663
ACPL_1150	ACPL_5521	ACPL_1150	ACPL_5521	y4lL-like uncharacterized protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	Signaling protein ykoW; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	0.663
ACPL_1150	ACPL_5711	ACPL_1150	ACPL_5711	y4lL-like uncharacterized protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	Cellulose synthesis regulatory protein; FOG: GGDEF domain.	0.835
ACPL_1150	ACPL_762	ACPL_1150	ACPL_762	y4lL-like uncharacterized protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	Putative signaling protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	0.811
ACPL_1150	cckA	ACPL_1150	ACPL_3395	y4lL-like uncharacterized protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	Osmosensitive K+ channel histidine kinase.	0.805
ACPL_3288	ACPL_1150	ACPL_3288	ACPL_1150	Phytochrome-like protein cph2; FOG: EAL domain.	y4lL-like uncharacterized protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	0.761
ACPL_3288	ACPL_3397	ACPL_3288	ACPL_3397	Phytochrome-like protein cph2; FOG: EAL domain.	Biofilm architecture maintenance protein mbaA; FOG: GGDEF domain.	0.672
ACPL_3288	ACPL_3398	ACPL_3288	ACPL_3398	Phytochrome-like protein cph2; FOG: EAL domain.	Putative signaling protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	0.545
ACPL_3288	ACPL_3512	ACPL_3288	ACPL_3512	Phytochrome-like protein cph2; FOG: EAL domain.	Putative signaling protein; FOG: GGDEF domain.	0.775
ACPL_3288	ACPL_4813	ACPL_3288	ACPL_4813	Phytochrome-like protein cph2; FOG: EAL domain.	Putative signaling protein; FOG: EAL domain.	0.771
ACPL_3288	ACPL_5361	ACPL_3288	ACPL_5361	Phytochrome-like protein cph2; FOG: EAL domain.	Putative signaling protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	0.669
ACPL_3288	ACPL_5521	ACPL_3288	ACPL_5521	Phytochrome-like protein cph2; FOG: EAL domain.	Signaling protein ykoW; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	0.671
ACPL_3288	ACPL_5711	ACPL_3288	ACPL_5711	Phytochrome-like protein cph2; FOG: EAL domain.	Cellulose synthesis regulatory protein; FOG: GGDEF domain.	0.814
ACPL_3288	ACPL_762	ACPL_3288	ACPL_762	Phytochrome-like protein cph2; FOG: EAL domain.	Putative signaling protein; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.	0.821
ACPL_3288	cckA	ACPL_3288	ACPL_3395	Phytochrome-like protein cph2; FOG: EAL domain.	Osmosensitive K+ channel histidine kinase.	0.809