Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_3407Uncharacterized protein conserved in bacteria. (120 aa)    
Predicted Functional Partners:
ACPL_3408
Uncharacterized protein; Predicted RNA polymerase sigma factor containing a TPR repeat domain; Belongs to the sigma-70 factor family.
 
     0.933
ACPL_3913
Uncharacterized protein; Predicted RNA polymerase sigma factor containing a TPR repeat domain; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.748
ACPL_3406
Hypothetical protein.
 
     0.737
ACPL_3914
Uncharacterized protein conserved in bacteria.
  
     0.712
ACPL_3259
Uncharacterized protein; Predicted RNA polymerase sigma factor containing a TPR repeat domain; Belongs to the sigma-70 factor family.
 
     0.661
ACPL_627
Uncharacterized protein; Predicted RNA polymerase sigma factor containing a TPR repeat domain; Belongs to the sigma-70 factor family.
 
     0.639
ACPL_4030
Uncharacterized protein conserved in bacteria.
  
     0.628
ACPL_3564
Uncharacterized protein; Predicted RNA polymerase sigma factor containing a TPR repeat domain; Belongs to the sigma-70 factor family.
 
     0.624
ACPL_4031
Uncharacterized protein; Predicted RNA polymerase sigma factor containing a TPR repeat domain; Belongs to the sigma-70 factor family.
 
     0.617
ACPL_4246
Uncharacterized protein; Predicted RNA polymerase sigma factor containing a TPR repeat domain; Belongs to the sigma-70 factor family.
 
     0.603
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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