Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_3414Hypothetical protein. (173 aa)    
Predicted Functional Partners:
ykuG
fadG-like uncharacterized protein; Putative peptidoglycan-binding domain-containing protein.
     
 0.731
cwlM
N-acetylmuramoyl-L-alanine amidase.
  
  
 0.440
ACPL_3412
Hypothetical protein.
       0.439
ACPL_1269
D-gamma-glutamyl-meso-diaminopimelic acid endopeptidase cwlS; Cell wall-associated hydrolases (invasion-associated proteins).
  
  
 0.411
ACPL_3029
yibP-like uncharacterized protein; Cell wall-associated hydrolases (invasion-associated proteins).
  
  
 0.411
ACPL_332
ydhO-like uncharacterized protein; Cell wall-associated hydrolases (invasion-associated proteins).
  
  
 0.411
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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