Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_3453Hypothetical protein. (106 aa)    
Predicted Functional Partners:
ACPL_6814
Uncharacterized protein conserved in bacteria.
     
  0.647
ACPL_3456
Protein of unknown function DUF1469.
  
    0.633
ACPL_3454
Hypothetical protein.
       0.623
ACPL_3455
Hypothetical protein.
       0.613
ACPL_5691
PRC-barrel domain protein; Uncharacterized protein conserved in bacteria.
    
  0.589
ACPL_2807
Putative CsbD-like family protein; Belongs to the UPF0337 (CsbD) family.
 
  
 0.558
ACPL_8069
Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein).
  
    0.525
bfrA
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
   
  
 0.500
ACPL_2549
CsbD family protein; Belongs to the UPF0337 (CsbD) family.
 
  
 0.484
ACPL_3457
Predicted membrane protein.
  
    0.477
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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