Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_3454Hypothetical protein. (90 aa)    
Predicted Functional Partners:
ACPL_3456
Protein of unknown function DUF1469.
 
     0.897
ACPL_8011
Hypothetical protein.
 
    0.821
iolB
5-deoxy-glucuronate isomerase; Uncharacterized enzyme involved in inositol metabolism.
   
    0.779
ACPL_3455
Hypothetical protein.
       0.773
ACPL_3457
Predicted membrane protein.
 
     0.665
ACPL_3771
Protein of unknown function DUF1469.
 
     0.657
ACPL_6565
Hypothetical protein.
 
     0.634
ACPL_3453
Hypothetical protein.
       0.623
ACPL_2457
Laminin subunit alpha-2.
 
     0.622
ACPL_5512
Regulator of nonsense transcripts-like protein; Superfamily I DNA and RNA helicases and helicase subunits.
  
    0.606
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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