STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACPL_3517Anti-sigma F factor; FOG: PAS/PAC domain. (318 aa)    
Predicted Functional Partners:
ACPL_3518
Hypothetical protein; FOG: PAS/PAC domain.
 
   0.915
ACPL_3519
Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
  
 
 0.726
ACPL_4840
Hypothetical protein.
  
     0.675
ACPL_379
Acetoacetate metabolism regulatory protein atoC; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.
 
   0.633
prsR
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
     0.622
barA
Sensory box histidine kinase/response regulator; Signal transduction histidine kinase.
  
  
 0.622
ACPL_2318
Signal transduction histidine kinase.
  
  
 0.621
ACPL_7741
Uncharacterized protein.
  
   0.600
ACPL_4809
Two-component system sensor protein; Signal transduction histidine kinase.
  
  
 0.599
prsR-2
Putative anti-sigma regulatory factor, serine/threonine protein kinase; Signal transduction histidine kinase.
  
     0.579
Your Current Organism:
Actinoplanes sp. SE50110
NCBI taxonomy Id: 134676
Other names: A. sp. SE50/110, Actinoplanes sp. (strain 50/110), Actinoplanes sp. 50/110, Actinoplanes sp. SE50/110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.